\documentclass{article} \usepackage[latin1]{inputenc} \usepackage{fullpage} \begin{document} \begin{itemize} \section*{Books} \subsection*{Chapters of Books} \item[1] ``A Tutorial on Density Functional Theory'', F. Nogueira, A. Castro, and M.\,A.\,L. Marques, in {\it A Primer in Density-Functional Theory}, C. Fiolhais, F. Nogueira, and M.\,A.\,L. Marques (ed.), Lecture Notes in Physics, Vol. 620, Springer, Berlin, 218-256 (2003). \subsection*{Edited} \item[2] ``Fundamentals of Time-Dependent Density-Functional Theory'', Miguel A. L. Marques, Neepa T. Maitra, Fernando Nogueira, Eberhard K. U. Gross, Angel Rubio (Eds.), Lecture Notes in Physics (Springer, Berlin) {\bf 837} (2012). \item[3] ``Time-Dependent Density Functional Theory'', M.\,A.\,L. Marques, C. Ullrich, F. Nogueira, A. Rubio, K. Burke, and E.\,K.\,U. Gross (Eds.), Lecture Notes in Physics (Springer, Berlin) {\bf 706} (2006). \item[4] ``A Primer in Density-Functional Theory'', C. Fiolhais, F. Nogueira, and M.\,A.\,L. Marques (Eds.), Lecture Notes in Physics (Springer, Berlin) {\bf 620} (2003). \section*{Papers} \subsection*{International Journals} \item[5] ``High-throughput search of ternary chalcogenides for p-type transparent electrodes'', Jingming Shi, Tiago F.\,T. Cerqueira, Wenwen Cui, Fernando Nogueira, Silvana Botti, Miguel A.\,L. Marques, Scientific Reports {\bf 7}, 43179 (2017). \item[6] ``Finite-Size Effects in the Absorption Spectra of a Single-Wall Carbon Nanotube'', Jaime Silva, Micael J. T. Oliveira, Senentxu Lanceros-Mendez, Fernando Nogueira, J. Phys. Chem. C {\bf 120}, 18268-18274 (2016). \item[7] ``Insights into colour-tuning of chlorophyll optical response in green plants'', J. Jornet-Somoza, J. Alberdi-Rodriguez, B. F. Milne, X. Andrade, M.\,A.\,L. Marques, F. Nogueira, M.\,J.\,T. Oliveira, J.\,J.\,P. Stewart, A. Rubio, Phys. Chem. Chem. Phys. {\bf 17}, 26599-26606 (2015). \item[8] ``Synthesis, structure, theoretical studies and luminescent properties of a ternary erbium(III) complex with acetylacetone and bathophenanthroline ligands'', Pablo Martín-Ramos, Pedro S. Pereira Silva, Pedro Chamorro-Posada, Manuela Ramos Silva, Bruce F. Milne, Fernando Nogueira, Jesús Martín-Gil, Journal of Luminescence {\bf 162}, 42-49 (2015). \item[9] ``Materials Design On-the-Fly'', Tiago F. T. Cerqueira, Rafael Sarmiento-Pérez, Maximilian Amsler, F. Nogueira, Silvana Botti, Miguel A. L. Marques, J. Chem. Theory Comput. {\bf 11}, 3955-3960 (2015). \item[10] ``Real-space grids and the Octopus code as tools for the development of new simulation approaches for electronic systems'', X. Andrade, D.\,A. Strubbe, U. de Giovannini, A.\,H. Larsen, M.\,J.\,T. Oliveira, J. Alberdi-Rodriguez, A. Varas, I. Theophilou, N. Helbig, M. Verstraete, L. Stella, F. Nogueira, A. Aspuru-Guzik, A. Castro. M.\,A.\,L. Marques, A. Rubio, Phys. Chem. Chem. Phys. {\bf 17}, 31371-31396 (2015). \item[11] ``Optical and Magnetic Excitations of Metal-Encapsulating Si Cages: A Systematic Study by Time-Dependent Density Functional Theory'', M.\,J.\,T. Oliveira, P.\,V.\,C. Medeiros, J.\,R.\,F. Sousa, F. Nogueira, G.\,K. Gueorguiev, J. Phys. Chem. C {\bf 118}, 11377-11384 (2014). \item[12] ``Theoretical study of heavy-atom tuning of nonlinear optical properties in group 15 derivatives of N,N,N-trimethylglycine (betaine)'', Bruce F. Milne, Fernando Nogueira and Cláudia Cardoso, Dalton Transactions {\bf 42}, 3695-3703 (2013). \item[13] ``Marine natural products from the deep Pacific as potential non-linear optical chromophores'', Bruce F. Milne, Patrick Norman, Fernando Nogueira and Cláudia Cardoso, Phys. Chem. Chem. Phys. {\bf 15}, 14814-14822 (2013). \item[14] ``Full Color Modulation of Firefly Luciferase through Engineering with Unified Stark Effect'', Duanjun Cai, Miguel Alexandre Lopes Marques, Fernando Nogueira, J. Phys. Chem. B {\bf 117}, 13725-13730 (2013). \item[15] ``On the influence of water on the electronic structure of firefly oxyluciferin anions from absorption spectroscopy of bare and monohydrated ions in vacuo'', Kristian Støchkel, ChristianHansen, Jørgen Houmøller, Lisbeth Nielsen, Kelvin Anggara, Mathieu Linares, Patrick Norman, Fernando Nogueira, Oleg Maltsev, Lukas Hintermann, Steen Brøndsted Nielsen, Pance Naumov, Bruce F. Milne, J. Am. Chem. Soc. {\bf 135}, 6485-6493 (2013). \item[16] ``TDDFT in massively parallel computer architectures: the octopus project'', X. Andrade, J. Alberdi-Rodriguez, D.\,A. Strubbe, M.\,J.\,T. Oliveira, F. Nogueira, A. Castro, J. Muguerza, A. Arruabarrena, S.\,G. Louie, A. Aspuru-Guzik, A. Rubio, M.\,A.\,L. Marques, J. Phys.: Condens. Matter {\bf 24}, 233202 (2012). \item[17] ``Accurate Color Tuning of Firefly Chromophore by Modulation of Local Polarization Electrostatic Fields'', Duanjun Cai, Miguel A. L. Marques, Fernando Nogueira, The Journal of Physical Chemistry B {\bf 115}, 329-332 (2011). \item[18] ``Fragment molecular orbital investigation of the role of AMP protonation in firefly luciferase pH-sensitivity'', Bruce F. Milne, Miguel A. L. Marques and Fernando Nogueira, Physical Chemistry Chemical Physics {\bf 12}, 14285-14293 (2010). \item[19] ``Computational Study of Molecules with High Intrinsic Hyperpolarizabilities'', Cláudia Cardoso, Paulo E. Abreu, Bruce F. Milne and Fernando Nogueira, The Journal of Physical Chemistry A {\bf 114 (39)}, 10676-10683 (2010). \item[20] ``Bioheterojunction Effect on Fluorescence Origin and Efficiency Improvement of Firefly Chromophores'', Duanjun Cai, Miguel A. L. Marques, Bruce F. Milne and Fernando Nogueira, The Journal of Physical Chemistry Letters {\bf 1 (19)}, 2781-2787 (2010). \item[21] ``Structure Dependence of Hyperpolarizability in Octopolar Molecules'', C. Cardoso and P. E. Abreu and F. Nogueira, J. Chem. Theory Comput. {\bf 5}, 850-858 (2009). \item[22] ``Photoabsorption Spectra of Small Cationic Xenon Clusters from Time-Dependent Density Functional Theory'', M.\,J.\,T. Oliveira, F. Nogueira, M.\,A.\,L. Marques, Angel Rubio, J. Chem. Phys. {\bf 131}, 214302 (2009). \item[23] ``Experimental and ab-initio studies of the spectroscopic properties of N, N ’, N ” triphenylguanidine and N, N ’, N ” triphenylguanidinium chloride'', C. Cardoso, P. S. Pereira Silva, M. Ramos Silva, A. Matos Beja, J. A. Paixão, F. Nogueira, A. J. F. N. Sobral, Journal of Molecular Structure {\bf 878}, 169-176 (2008). \item[24] ``Oxoperoxo vanadium(V) complexes of L-lactic acid: Density functional theory study of structure and NMR chemical shifts'', Licinia L. G. Justino, M. Luisa Ramos, Fernando Nogueira, Abilio J. F. N. Sobral, Carlos F. G. C. Geraldes, Martin Kaupp, Hugh D. Burrows, Carlos Fiolhais, and Victor M. S. Gil, Inorganic Chemistry {\bf 47}, 7317-7326 (2008). \item[25] ``Density Functional Theory study of the structure and NMR chemical shifts in peroxovanadium (V) complexes of L-lactic acid'', L. Justino, M. L. Ramos, A. Sobral, M. Kaupp, F. Nogueira, H. Burrougs, C. Fiolhais and V. M. S. Gil, Inorganic Chemistry {\bf 47(16)}, 7317-7326 (2008). \item[26] ``Generating relativistic pseudo-potentials with explicit incorporation of semi-core states using APE, the Atomic Pseudo-potentials Engine'', Micael Oliveira, Fernando Nogueira, Computer Physics Communications {\bf 178}, 524-534 (2008). \item[27] ``Density functional and X-ray di\ffraction studies of two polymorphs of N, N ’, N ”-triphenylguanidine'', P.\,S.\,P. Silva, C. Cardoso, M.\,R. Silva, J.\,A. Paixão, A.\,M. Beja, F. Nogueira, Journal of Molecular Structure {\bf 888}, 92-98 (2008). \item[28] ``Nonuniqueness of inverted core-mantle boundary flows and deviations from tangential geostrophy'', M. A. Pais, O. Oliveira, F. Nogueira, J. Geophys. Res. {\bf 109}, B08105-1-B08105-20 (2004). \item[29] ``Pattern search methods for user-provided points: application to molecular geometry problems'', P. Alberto, F. Nogueira, H. Rocha, and Luís N. Vicente, SIAM Journal on Optimization {\bf 14}, 1216-1236 (2004). \item[30] ``A plane-wave pseudopotential description of charged clusters'', F. Nogueira, J. L. Martins, and C. Fiolhais, The European Physics Journal D (Atoms, Molecules and Cluster Physics) {\bf 9}, 229-233 (2000). \item[31] ``Structural phase transitions in Na, Mg and Al crystals: dominant role of the valence in local pseudopotential theory'', J. P. Perdew, F. Nogueira, and C. Fiolhais, Journal of Molecular Structure (Theochem) {\bf 501-502}, 261-269 (2000). \item[32] ``Trends in the properties and structures of the simple metals from a universal local pseudopotential,'', F. Nogueira, C. Fiolhais, and J. P. Perdew, Physical Review B {\bf 59}, 2570-2578 (1999). \item[33] ``Charged metal clusters: atomistic versus continuous background continuous description'', F. Nogueira, A. Vieira, M. Brajczewska, and C. Fiolhais, Condensed Matter Theories, vol. XIII, J. da Providência and F. B. Malik (eds.), Nova Science, New York, 333-342 (1998). \item[34] ``A comment on "EPR and the Copenhagen interpretation"'', J. M. Domingos, F. Nogueira, M. H. Caldeira, Fernando S. dos Aidos, European Journal of Physics {\bf 19}, 197 (1998). \item[35] ``Tests of a density-based pseudopotential for sixteen simple metals'', L. Pollack, J. P. Perdew, J. He, M.\,A.\,L. Marques, F. Nogueira, and C. Fiolhais, Phys. Rev. B {\bf 55}, 15544-15551 (1997). \item[36] ``The evanescent core pseudopotential: applications to surfaces and clusters'', 38. C. Fiolhais, F. Nogueira, and C. Henriques, Progress in Surface Science {\bf 53}, 305-314 (1996). \item[37] ``Evanescent core pseudopotential: applications to surfaces and clusters'', C. Fiolhais, F. Nogueira, and C. Henriques, Progress in Surface Science {\bf 53}, 315-322 (1996). \item[38] ``Transferability of a local pseudopotential based on solid-state electron density'', F. Nogueira, C. Fiolhais, Jingson He, J. P. Perdew, and A. Rubio, Journal of Physics: Condensed Matter {\bf 8}, 287-302 (1996). \item[39] ``Locality, relativity and Bell's inequalities'', F. Nogueira, M. H. Caldeira, and J. M. Domingos, Physica Scripta {\bf 53}, 18-22 (1996). \item[40] ``EPR: Copenhagen interpretation has got what it takes'', J. M. Domingos, F. Nogueira, M. H. Caldeira, and F. D. dos Aidos, European Journal of Physics {\bf 17}, 125-130 (1996). \item[41] ``Expectation values and non-commuting operators'', F. Nogueira, F. D. dos Aidos, M. H. Caldeira and J. M. Domingos, European Journal of Physics {\bf 13}, 284-285 (1992). \section*{Proceedings} \subsection*{International Conferences} \item[42] ``Recent Memory and Performance Improvements in Octopus Code'', J. Alberdi-Rodriguez, M.\,J.\,T. Oliveira, P. García-Risueño, F. Nogueira, J. Muguerza, A. Arruabarrena, and A. Rubio, Computational Science and Its Applications - ICCSA 2014, B. Murgante, S. Misra, A.\,M.\,A.\,C. Rocha, C. Torre, J.\,G. Rocha, M.\,I. Falcão, D. Taniar, B.\,O. Apduhan, O. Gervasi (Eds.), 607-622 (2014). \item[43] ``Métodos de procura em padrão aplicados a problemas de optimização de geometria molecular'', P. Alberto, F. Nogueira, H. Rocha, Métodos Numéricos en Ingenería 2005 José Aparício et. al. (Eds.), SEMNI, Barcelona, ISBN 84-95999-74-9, 431 (2005). \item[44] ``Pattern search methods for user-provided points'', P. Alberto, F. Nogueira, H. Rocha and L. N. Vicente, Lecture Notes in Computer Science - Proceedings of the 2001 International Conference on Computational Science, San Francisco, USA, May 2001 {\bf 2074}, 95-98 (2001). \item[45] ``Charged metal clusters: atomistic versus continuous background descriptions'', F. Nogueira, A. Vieira, M. Brajczewska, and C. Fiolhais, Condensed Matter Theories, vol XIII, J. da Providência and F. B. Malik (ed.), Nova Science, New York, 333-342 (1998). \section*{Communications} \subsection*{Invited} \item[46] ``Time-dependent density-functional theory: a brief overview and selected applications in physics, chemistry, and biology'', Fernando Nogueira, Department of Physics, Chemistry and Biology, University of Linkoping, Sweden (2012). \item[47] ``Colour tuning and efficiency improvements in firefly bioluminescence'', Fernando Nogueira, 11th Iberian Joint Meeting on Atomic and Molecular Physics, 19-22 June, Coimbra, Portugal (2011). \item[48] ``Como prever algumas propriedades de nano-estruturas'', Fernando Nogueira, Physics Department of the University of Coimbra, Portugal (October 12, 2005) (2005). \item[49] ``Predicting some properties of nanostructures'', Fernando Nogueira, ICPS 2005, Coimbra, Portugal (August 12-17, 2005) (2005). \subsection*{Oral} \item[50] ``Formação avançada de professores do ensino secundário para preparação de concorrentes às Olimpíadas Internacionais de Física'', Fernando Nogueira, Horácio Fernandes, João M. S. Gil, José António Paixão, Manuel Fiolhais, 2ª Conferência de Física da CPLP, Rio de Janeiro, Brasil, 10-12 Setembro (2012). \item[51] ``Nonlinear optical properties of polychlorotriphenylmethyl radicals: a computational study'', Cláudia Cardoso, Bruce Forbes Milne, Fernando Nogueira, March meeting of the American Physical Society, Dallas TX, USA, March 21-25 (2011). \item[52] ``Fragment Molecular Orbital Studies of Luciferase from the Japanese Firefly Luciola cruciata (Flash presentation)'', Milne B.\,F., Marques M.\,A.\,L. and Nogueira F., Computational Nanoscience (MC9) Symposium, 42nd IUPAC Congress, Glasgow, Scotland (2009). \item[53] ``Evidence of structure dependence of hyperpolarisability in octopolar molecules'', C. Cardoso, P. E. Abreu, F. Nogueira, March Meeting (2008). \item[54] ``Evidence of structure dependence of hyperpolarizability in octupolar molecules'', Cláudia Cardoso, Paulo Abreu, Fernando Nogueira, 2008 APS March Meeting, March 10–14, New Orleans, USA (2008). \item[55] ``Fully ab-initio study of the optical response of charged rare gas clusters'', Fernando Nogueira, Micael Oliveira, Miguel Marques, 2008 APS March Meeting, New Orleans, USA, March 10–14 (2008). \item[56] ``Crystal and nonlinear optical properties of triphenylguanidine: theory and experiments'', C. Cardoso, P. Silva, F. Nogueira, J. A. Paixão, 2007 APS March Meeting, March 5-9, Denver, USA (2007). \item[57] ``Optical and magnetic excitations in small transition-metal clusters using TDDFT'', Micael Oliveira, Fernando Nogueira, Angel Rubio, 2007 APS March Meeting, Denver, USA, March 5-9 (2007). \item[58] ``Estudo Estrutural do Formato de Trifenilguanidina por Difração de Raios-X'', Pedro S. Pereira Silva and Cláudia Cardoso and José A. Paixão and Manuela Ramos Silva and Ana M. Matos Beja and Fernando Nogueira, Física 2006 - 15ª Conferência Nacional de Física, Aveiro, Portugal, 4 a 7 de Setembro (2006). \subsection*{Poster} \item[59] ``Marine natural products: a new source of novel chromophores for nonlinear optics'', Bruce F. Milne, Cláudia Cardoso, Marcel Jaspars, Fernando Nogueira, Gordon Research Conference - Marine Natural Products, Ventura, CA, USA (2012). \item[60] ``Optical absorption of metal-encapsulating Si cages from TDDFT'', M.\,J.\,T. Oliveira, J. R. F. Sousa, P. V. C. Medeiros, G. K. Gueorguiev, F. Nogueira, ETSF Workshop 2012 Coimbra, Portugal, October 2-5 (2012). \item[61] ``Gas phase spectroscopy of the firefly luciferin anion: comparison of experiment with TDDFT predictions'', Bruce F. Milne, Kristian Støchkel, Steen Brønsted Nielsen and Fernando Nogueira, Faraday Discussions 150 "Frontiers in Spectroscopy", Basel, Switzerland (2011). \item[62] ``Electronic Properties of Doped Silicon Nanocrystals,'', E. L. Silva, J. Coutinho, F. Nogueira, Time-Dependent Density-Functional Theory: Prospects and Applications 4th, Centro de Ciencias de Benasque Pedro Pascual, Benasque, Spain (2010). \item[63] ``Bio-HeteroJunction Effect Origin and Efficiency Improvement of Firefly Chromophores'', Cai D.\,J., Marques M.\,A.\,L., Milne B.\,F., Nogueira F., Gordon Research Conference on Time-Dependent Density Functional Theory, Colby-Sawyer College, New London, NH, USA (2009). \item[64] ``Computational study of high intrinsic hyperpolarizability molecules'', C. Cardoso, P. E. Abreu, F. Nogueira, Gordon research Conferences, Time-Dependent Density-Functional Theory (2009). \item[65] ``Computational study of high intrinsic hyperpolarizability molecules'', C. Cardoso, P. E. Abreu, F. Nogueira, 9º Encontro Nacional de Química-Física, Aveiro (2009). \item[66] ``Fragment Molecular Orbital Studies of Luciferase from the Japanese Firefly Luciola cruciata'', Milne B.\,F., Marques M.\,A.\,L. and Nogueira F., Gordon Research Conference on Time-Dependent Density Functional Theory, Colby-Sawyer College, New London, NH, USA (2009). \item[67] ``Fragment Molecular Orbital Studies of Luciferase from the Japanese Firefly Luciola cruciata'', Milne B.\,F., Marques M.\,A.\,L. and Nogueira F., Computational Nanoscience (MC9) Symposium, 42nd IUPAC Congress, Glasgow, Scotland (2009). \item[68] ``Fragment Molecular Orbital Studies of Luciferase from the Japanese Firefly Luciola cruciata'', Milne B.\,F., Marques M.\,A.\,L., Nogueira F., 14th ETSF Workshop on Electronic Excitations, Evora, Portugal (2009). \item[69] ``Photoabsorption Spectra of Small Cationic Xenon Clusters from TDDFT'', M.\,J.\,T. Oliveira, F. Nogueira, M.\,A.\,L. Marques, Angel Rubio, 6th NQ-ETSF Young Researchers Meeting, Berlin, Germany, June 2-6 (2009). \item[70] ``Capillary growth induced by tumors'', Susana Silva, Rui D. M. Travasso, and Fernando Nogueira,, Apresentacao Intercalar dos Projectos de Engenharia Biomedica, Coimbra, Portugal 3rd - 5th June (2009). \item[71] ``Capillary growth induced by tumors'', Susana Silva, Rui D. M. Travasso, and Fernando Nogueira,, Apresentacao Intercalar dos Projectos de Engenharia Biomedica, Coimbra, Portugal, 18th-20th Feb (2009). \item[72] ``Crystal structure, experimental and ab initio studies of the spectroscopic properties of N,N',N"-triphenylguanidinium chloride'', P.\,S. Pereira Silva, C. Cardoso, J.\,A. Paixão, M. Ramos Silva, A. Matos Beja, F. Nogueira, 8º Encontro Nacional de Química Física da Sociedade Portuguesa de Química (2007). \item[73] ``Cálculos ab initio para a molecular octopular trifenilguanidina'', C. Cardoso, P. S. Pereira Silva, F. Nogueira, J. A. Paixão, 15ª Conferência Nacional de Física, 4 a 7 de Setembro, Aveiro, Portugal (2006). \item[74] ``Ab initio calculations for two forms of triphenylguanidine'', Cláudia Cardoso, Micael Oliveira, Fernando Nogueira, José António Paixão, 2nd International workshop Time-dependent Density-Functional Theory: Prospects and Applications, 6 a 10 de Setembro, Benasque, Espanha (2006). \item[75] ``X-Ray Diffraction Studies of Octupolar Molecules'', P.\,S. Pereira Silva, J.\,A. Paixão, M. Ramos Silva, A. Matos Beja, C. Cardoso, F. Nogueira, 10th International Symposium on Radiation Physics, 17 a de 22 Setembro, Coimbra, Portugal (2006). \item[76] ``Exploring the non-unicity of inverted CMB flows'', A. Pais, O. Oliveira, F. Nogueira, Geophysical Research Abstracts {\bf 5}, 11694 (2003). \item[77] ``Different methods to compute flows at the core-mantle boundary from geomagnetic data'', F. Nogueira, O. Oliveira, M. A. Pais, G. Hulot, J.-L. Le Mouël, 26th General Assembly of European Geophysical Society (2001). \section*{Thesis} \subsection*{PhD thesis} \item[78] ``Description of physical properties of solids and clusters with pseudopotentials'', Fernando Nogueira, University of Coimbra (1999). \subsection*{MSc thesis} \item[79] ``As desigualdades de Bell e o conflito entre a localidade e a Mecânica Quântica'', F. Nogueira, University of Coimbra (1993). \end{itemize} \end{document}