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\section*{Books}

\item[1] ``Física e Química A 10.º e 11.º Anos - Exames Nacionais 2017-2020 (1.as Fases, 2.as Fases e Épocas Especiais)'', Carlos Portela, Helena Alberto, Lucília Brito, Joaquim Morgado, Rogério Nogueira, Rui Travasso, Editorial do Ministério da Educação (2021).

\subsection*{Books}

\item[2] ``Física e Química A 10.º e 11.º Anos - Exames Nacionais 2012-2017 (1.as Fases, 2.as Fases e Épocas Especiais)'', Carlos Portela, Helena Alberto, Lucília Brito, Joaquim Morgado, Rogério Nogueira, Rui Travasso, Editorial do Ministério da Educação (2018).

\item[3] ``Física e Química A 10.º e 11.º Anos - Exames Nacionais 2013-2018 (1.as Fases, 2.as Fases e Épocas Especiais)'', Carlos Portela, Helena Alberto, Lucília Brito, Joaquim Morgado, Rogério Nogueira, Rui Travasso, Editorial do Ministério da Educação (2018).

\item[4] ``Física e Química A 10.º e 11.º Anos - Exames Nacionais 2010-2015 (1.as Fases, 2.as Fases e Épocas Especiais)'', Carlos Portela, Helena Alberto, Lucília Brito, Joaquim Morgado, Rogério Nogueira, Rui Travasso, Editorial do Ministério da Educação (2016).

\subsection*{Chapters of Books}

\item[5] ``Reducing Computation Time by Monte Carlo Method: An Application in Determining Axonal Orientation Distribution Function'', Nicolás F Lori, Rui Lavrador, Lucia Fonseca, Carlos Santos, Rui Travasso, Artur Pereira, Rosaldo Rossetti, Nuno Sousa, Victor Alves, New Advances in Information Systems and Technologies, Springer International Publishing, 95-105 (2016).

\item[6] ``Understanding the Dynamics of Tumor Angiogenesis: A Systems Biology Approach'', MM Quinas-Guerra, TM Ribeiro-Rodrigues, JC Rodríguez-Manzaneque, RDM Travasso, Systems Biology in Cancer Research and Drug Discovery, Ed. A Azmi, Springer Netherlands, 197-227 (2012).

\item[7] ``The Mechanics of Blood Vessel Growth'', Rui D. M. Travasso, Vasculogenesis and Angiogenesis – from Embrionic Development to Regenerative Medicine, eds. Dan T. Simionescu and Agneta Simionescu, InTech, 187-204 (2011).

\item[8] ``Modeling the Self-Assembly of Ternary Blends that Encompass Photosensitive Chemical Reactions: Creating Defect-free, Hierarchically Ordered Materials'', Olga Kuksenok, Rui DM Travasso, Pratyush Dayal, Anna C. Balazs, Encyclopedia of Polymer Blends, Vol. 1, Ed. A. Isayev, Wiley-VCH Publishers, 269-307 (2010).

\item[9] ``Modeling the Self-Assembly of Ternary Blends that Encompass Photosensitive Chemical Reactions: Creating Defect-free, Hierarchically Ordered Materials'', Olga Kuksenok, Rui D.\,M. Travasso, Pratyush Dayal and Anna C. Balazs, Encyclopedia of Polymer Blends, 1, Ed. A. Isayev, Wiley-VCH Publishers (2009).

\section*{Papers}

\subsection*{International Journals}

\item[10] ``TrajPy: empowering feature engineering for trajectory analysis across domains'', M Moreira-Soares, E Mossmann, RDM Travasso, JR Bordin, Bioinform. Adv. {\bf 4(1)}, vbae026 (2024).

\item[11] ``Topology in soft and biological matter'', L Tubina, R. Travasso et al., Phys. Rep. {\bf 1075}, 1-137 (2024).

\item[12] ``The architecture of redox microdomains: Cascading gradients and peroxiredoxins´ redox-oligomeric coupling integrate redox signaling and antioxidant protection'', M Griffith, A Araûjo, R Travasso, A Salvador, Redox Biol. {\bf 69}, 103000 (2023).

\item[13] ``A mathematical model of fibrinogen-mediated erythrocyte-erythrocyte adhesion'', CS Lopes, J Curty, FA Carvalho, A Hernandez-Machado, K Kinoshita, NC Santos, RDM Travasso, Commun. Biol. {\bf 6(1)}, 192 (2023).

\item[14] ``The ECM and tissue architecture are major determinants of early invasion mediated by E-cadherin dysfunction'', S Melo, P Guerrero, MM Soares, JR Bordin, F Carneiro, P Carneiro, MB Dias, J Carvalho, J Figueiredo, R Seruca, RDM Travasso, Commun. Biol. {\bf 6 (1)}, 1132 (2023).

\item[15] ``A coupled logistic map lattice model for two competing species'', J. Sales, R. Travasso, M. Buckeridge, S. A. Carvalho, Eur. Phys. J. Plus {\bf 138}, 1020 (2023).

\item[16] ``Image-based angio-adaptation modelling: a playground to study cerebrovascular development'', RDM Travasso, V Coelho-Santos, Front. Psychol. {\bf 14}, 1223308 (2023).

\item[17] ``Mice with Type 2 Diabetes Present Significant Alterations in Their Tissue Biomechanical Properties and Histological Features'', TB Cruz, FA Carvalho, PN Matafome, RA Soares, NC Santos, RD Travasso, MJ Oliveira, Biomedicines {\bf 10(1)}, 57 (2022).

\item[18] ``A multiscale cell-based model of tumor growth for chemotherapy assessment and tumor-targeted therapy through a 3D computational approach'', SJ Nivlouei, M Soltani, E Shirani, MR Salimpour, R Travasso, J Carvalho, Cell Prolif. {\bf 55(3)}, e13187 (2022).

\item[19] ``How abundant are superoxide and hydrogen peroxide in the vasculature lumen, how far can they reach?'', T. Sousa, M. Gouveia, RDM Travasso, A. Salvador, Redox Biol. {\bf 58}, 102527 (2022).

\item[20] ``How far does hydrogen peroxide travel in the microcirculation and in tissues?'', T Sousa, E Fernandes, M Gouveia, J Laranjinha, R Barbosa, A Ledo, R Travasso, A Salvador, FEBS Open Bio {\bf 12(1)}, 51-52 (2022).

\item[21] ``Tumor cell invasiveness in the initial stages of bladder cancer development - A computational study'', J. Carvalho, V. Lopes, R. Travasso, Int J Numer Method Biomed Eng. {\bf 37(1)}, e3417 (2021).

\item[22] ``A three dimensional computer model of urothelium and bladder cancer initiation, progress and collective invasion'', J. Carvalho, V. Lopes, R. Travasso, Inform. Med. Unlocked {\bf 26}, 100750 (2021).

\item[23] ``A mathematical model for the dependence of keratin aggregate formation on the quantity of mutant keratin expressed in EGFP-K14 R125P keratinocytes'', Marcos Gouveia, Tjaša Sorčan, Špela Zemljič-Jokhadar, Rui D.\,M. Travasso, Mirjana Liović, PLoS One {\bf 16(12)} (2021).

\item[24] ``Quantitative analysis of neuronal mitochondrial movement reveals patterns resulting from neurotoxicity of rotenone and 6-hydroxydopamine'', RF Simoes, R Pino, M Moreira-Soares, J ( Kovarova, J Neuzil, R Travasso, PJ Oliveira, T Cunha-Oliveira, FB Pereira, FASEB J. {\bf 35(12)}, e22024 (2021).

\item[25] ``Intratumoral VEGF nanotrapper reduces gliobastoma vascularization and tumor cell mass'', F Sousa, AI Costa-Pereira, A Cruz, FJ Ferreira, M Gouveia, B Sarmento, RDM Travasso, IM Pinto, J. Control. Release {\bf 339}, 381-390 (2021).

\item[26] ``Tumor cell invasiveness in the initial stages of bladder cancer development - A computational study'', J Carvalho, V Lopes, R Travasso, Int J Numer Method Biomed Eng, e3417 (2020).

\item[27] ``Keratin Dynamics and Spatial Distribution in Wild-Type and K14 R125P Mutant Cells-A Computational Model'', M Gouveia, S Zemljic-Jokhadar, M Vidak, B Stojkovic, J Derganc, R Travasso, M Liovic, Int. J. Mol. Sci. {\bf 21(7)}, 2596 (2020).

\item[28] ``Adhesion modulates cell morphology and migration within dense fibrous networks'', Mauricio Moreira-Soares, Susana P. Cunha, José R. Bordin, Rui D. M. Travasso, J. Phys.: Condens. Matter {\bf 32}, 314001 (2020).

\item[29] ``Data Extraction from Mitochondrial Motility Tracking using Computational Algorithms'', R Pino, R Simoes, M Moreira-Soares, T Cunha-Oliveira, J Kovarova, J Neuzil, R Travasso, PJ Oliveira, F Pereira, Eur. J. Clin. Investig. {\bf 50(1)}, 79-80 (2020).

\item[30] ``Notch signaling and taxis mechanims regulate early stage angiogenesis: A mathematical and computational model'', R Vega, M Carretero, RDM Travasso, LL Bonilla, PLOS Comput. Biol. {\bf 16(1)}, e1006919 (2020).

\item[31] ``Cortical stiffness of keratinocytes measured by lateral indentation with optical tweezers'', Špela Zemljič Jokhadar, Biljana Stojković, Marko Vidak, Tjaša Sorčan, Mirjana Liovic, Marcos Gouveia, Rui DM Travasso, Jure Derganc, PLoS One {\bf 15}, e0231606 (2020).

\item[32] ``Soft culture substrates favor stem-like cellular phenotype and facilitate reprogramming of human mesenchymal stem/stromal cells (hMSCs) through mechanotransduction'', H Gerardo, A Lima, J Carvalho, JRD Ramos, S Couceiro, RDM Travasso, RP das Neves, M Graos, Sci. Rep. {\bf 9}, 9086 (2019).

\item[33] ``Resonances in the response of fluidic networks inherent to the cooperation between elasticity and bifurcations'', D Yanez, RDM Travasso, EC Poire, Royal Soc. Open Sci. {\bf 6(9)}, 190661 (2019).

\item[34] ``Capillary network formation from dispersed endothelial cells: Influence of cell traction, cell adhesion, and extracellular matrix rigidity'', João R. D. Ramos, Rui Travasso, João Carvalho, , Phys. Rev. E {\bf 97}, 012408 (2018).

\item[35] ``Angiogenic Factors produced by Hypoxic Cells are a leading driver of Anastomoses in Sprouting Angiogenesis – a computational study'', Maurício Moreira-Soares, Rita Coimbra, Luís Rebelo, João Carvalho, Rui D. M. Travasso, , Scientific Reports {\bf 8}, 8726 (2018).

\item[36] ``When do redundant fluidic networks outperform non-redundant ones?'', Aimée M Torres Rojas, Rui D.\,M. Travasso, Ignacio Pagonabarraga, Eugenia Corvera Poiré, Europhysics Letters {\bf 117}, 64002 (2017).

\item[37] ``Localized redox relays as a privileged mode of cytoplasmic hydrogen peroxide signaling'', Rui D. M. Travasso, F. Sampaio dos Aidos, A. Bayani, P. Abranches, A. Salvador, , Redox Biology {\bf 12}, 233-245 (2017).

\item[38] ``Processing Time Reduction: an Application in Living Human High-Resolution Diffusion Magnetic Resonance Imaging Data'', NF Lori, A Ibanez, R Lavrador, L Fonseca, C Santos, RDM Travasso, A Pereira, R Rossetti, N Sousa, V Alves, J. Med. Syst. {\bf 40(11)}, 243 (2016).

\item[39] ``Obstructions in Vascular Networks: Relation Between Network Morphology and Blood Supply'', AM Torres Rojas, A Meza Romero, I Pagonabarraga, RDM Travasso, E Corvera Poiré, PLoS ONE {\bf 10(6)}, e0128111 (2015).

\item[40] ``The Force at the Tip - Modelling Tension and Proliferation in Sprouting Angiogenesis'', P Santos-Oliveira, A Correia, T Rodrigues, TM Ribeiro-Rodrigues, P Matafome, JC Rodríguez-Manzaneque, R Seiça, H Girão, RDM Travasso, PLoS Comput Biol {\bf 11 (8)}, e1004436 (2015).

\item[41] ``Hypoxia in Vascular Networks: A Complex System Approach to Unravel the Diabetic Paradox'', Y. Gandica, T. Schwarz, O. Oliveira, Rui D. M. Travasso, PLoS ONE {\bf 9(11)}, e113165 (2014).

\item[42] ``Flow and anastomosis in vascular networks'', Joaquín Flores, Alejandro Meza Romero, Rui DM Travasso, Eugenia Corvera Poiré, Journal of Theoretical Biology {\bf 317}, 257-270 (2013).

\item[43] ``Why do protein folding rates correlate with metrics of native topology?'', Patrícia FN Faísca, Rui DM Travasso, Andrea Parisi, Antonio Rey, PLoS ONE {\bf 7}, e35599 (2012).

\item[44] ``Tumor Angiogenesis and Vascular Patterning: A Mathematical Model'', Rui D. M. Travasso, Eugenia Corvera Poiré, Mario Castro, Juan Carlos Rodríguez-Manzaneque, A. Hernández-Machado, PLoS ONE {\bf 6}, e19989 (2011).

\item[45] ``The phase-field model in tumor growth'', Rui D. M. Travasso, Mario Castro, and Joana C. R. E. Oliveira, Philosophical Magazine {\bf 91}, 183-206 (2011).

\item[46] ``The folding of knotted proteins: insights from lattice simulations'', Patrícia F N Faísca, Rui D M Travasso, Tiago Charters, Ana Nunes and Marek Cieplak, Physical Biology {\bf 7}, 016009 (2010).

\item[47] ``Non-native interactions play an effective role in protein folding dynamics'', Patrícia F. N. Faísca, Ana Nunes, Rui D.\,M. Travasso, and Eugene I. Shakhnovich, Protein Science {\bf 19}, 2196-2209 (2010).

\item[48] ``The protein folding transition state: Insights from kinetics and thermodynamics'', Rui D. M. Travasso, Patrícia F. N. Faísca, Antonio Rey, J. Chem. Phys. {\bf 133}, 125102 (2010).

\item[49] ``Simulation of the spinodal phase separation dynamics of the Bi-Zn system'', Joana C.\,R.\,E. Oliveira, Maria H. Braga, Rui D. M. Travasso, J. of Non-Crystalline Solids {\bf 354}, 5340 (2008).

\item[50] ``Identifying critical residues in protein folding: Insights from -value and Pfold analysis'', Patricia F.\,N. Faisca, Rui D.\,M. Travasso, Robin C. Ball, and Eugene I. Shakhnovich, J. Chem Phys {\bf 129}, 095108 (2008).

\item[51] ``Pathways to folding, nucleation events and native geometry'', Rui D. M. Travasso, Margarida M. Telo da Gama, and Patricia Faisca, J Chem Phys {\bf 127}, 145106 (2007).

\item[52] ``Nucleation phenomena in protein folding: the modulating role of protein sequence'', Rui D. M. Travasso, Patricia Faisca, and Margarida M Telo da Gama, J. Phys.: Condens. Matter {\bf 19}, 285212 (2007).

\item[53] ``Dynamics of ternary mixtures with photosensitive chemical reactions: creating three dimensionally ordered ternary blends'', Olga Kuksenok, Rui D. M. Travasso and Anna C. Balazs, Phys. Rev. E {\bf 74}, 011502 (2006).

\item[54] ``Exploiting photo-induced reactions in polymer blends to create hierarchically ordered defect-free materials'', Rui D. M. Travasso, Olga Kuksenok and Anna C. Balazs, Langmuir {\bf 22}, 2620 (2006).

\item[55] ``Modeling the morphology and mechanical properties of sheared ternary mixtures'', Rui D. M. Travasso, Gavin A. Buxton, Olga Kuksenok, Kevin Good and Anna C. Balazs, J Chem Phys {\bf 122}, 194906 (2005).

\item[56] ``Harnessing light to create defect-free, hierarchically structured polymeric materials'', Rui D. M. Travasso, Olga Kuksenok and Anna C. Balazs, Langmuir {\bf 21}, 10912 (2005).

\item[57] ``Interface fluctuations, Burgers equations and coarsening under shear'', Alan J. Bray, Andrea Cavagna and Rui D. M. Travasso, Phys Rev E {\bf 65}, 016104 (2002).

\item[58] ``Interface fluctuations under shear'', Alan J. Bray, Andrea Cavagna and Rui D. M. Travasso, Phys Rev E {\bf 64}, 012102 (2001).

\item[59] ``Dynamics and delocalization transition for an interface driven by a uniform shear flow'', Rui D. M. Travasso, Alan J. Bray and Andrea Cavagna, J Phys A {\bf 34}, L195 (2001).

\item[60] ``Ohta-Jasnow-Kawasaki approximation for nonconserved coarsening under shear'', Andrea Cavagna, Alan J. Bray and Rui D. M. Travasso, Phys Rev E {\bf 62}, 4702 (2000).

\item[61] ``Glassy behavior in a ferromagnetic p-spin model'', Michael R. Swift, Hemant Bokil, Rui D. M. Travasso and Alan J. Bray, Phys Rev B {\bf 62}, 11494 (2000).

\subsection*{Portuguese Journals}

\item[62] ``Dinamica do crescimento tumoral: um olhar fisico'', Rui D. M. Travasso, Gazeta de Fisica {\bf 33, 3/4}, 18 (2011).

\section*{Proceedings}

\subsection*{International Conferences}

\item[63] ``Spatially localized redox relays allow sensitive site-specific hydrogen peroxide signaling'', M Griffith, A Araújo, R Travasso, A Salvador, Free Radic. Biol. Med. {\bf 208 (1)}, S29-S-30 (2023).

\item[64] ``How sensitive and site-specific hydrogen peroxide signaling can be achieved in human cells: spatially localized redox relays'', A Salvador, M Griffith, A Araujo, R Travasso, Eur. Biophys. J. {\bf 52(SUPPL 1)}, 749 (2023).

\item[65] ``Generating Vascular Networks: A Reinforcement Learning Approach'', J. Simoes, R Travasso, E Costa, T Baptista, 8th Annual International Conference on Machine Learning, Optimization and Data science (LOD) {\bf 13811}, 139-153 (2023).

\item[66] ``Endothelial cell dynamics in 3D vessel-like structures: a multi-phase field model'', M Gouveia, M Palmeira, R Travasso, Eur. J. Clin. Invest. {\bf 52(1)} (2022).

\item[67] ``How far does hydrogen peroxide travel in the microcirculation and in tissues?'', T Sousa, E Fernandes, M Gouveia, J Laranjinha, R Barbosa, A Ledo, R Travasso, A Salvador, FEBS Open Bio {\bf 12}, 51-52 (2022).

\item[68] ``Effect of anti-VEGF presentation in controlling vascular development'', R Travasso, AI Costa-Pereira, F Sousa, M Gouveia, F Ferreira, J Bessa, B Sarmento, IM Pinto, Eur. J. Clin. Invest. {\bf 52(1)} (2022).

\item[69] ``Three dimensional computer model of urothelium, bladder cancer development and collective tumor invasion'', J Carvalho, V Lopes, R Travasso, Eur. J. Clin. Investig. {\bf 51}, 104-104 (2021).

\item[70] ``Fibrinogen-mediated erythrocyte adhesion'', J Faria, R Travasso, C Lopes, N Santos, F Carvalho, A Hernandez-Machado, Eur. J. Clin. Investig. {\bf 51}, 101-101 (2021).

\item[71] ``Mathematical Perspective on Keratin Aggregate Formation in Keratinocytes with the Severe K14 R125P Mutation'', M Gouveia, T Sorcan, S Zemljic-Jokhadar, RDM Travasso, M Liovic, Eur. J. Clin. Invest. {\bf 51}, 101-102 (2021).

\item[72] ``How far can hydrogen peroxide travel in blood circulation?'', T. Sousa, R. Travasso, A. Salvador, Free Radic. Biol. Med. {\bf 165(1)}, NC9 (2021).

\item[73] ``How Far can Hydrogen Peroxide Travel in Microcirculation?'', T. Sousa, R. Travasso, A. Salvador, Eur. J. Clin. Invest. {\bf 51}, 94-94 (2021).

\item[74] ``Use of a Darwinian perspective of quantum mechanics to an analysis of science\’s contemporary description of the transition from pre-life to life'', N.\,F. Lori, R. Travasso, A.\,H. Blin, International Congress \“Darwin\’s impact on science, society and culture\”, Braga, Portugal 2009 (2009).

\subsection*{Portuguese Conferences}

\item[75] ``Use of Shannon information to relate function and structure in the brain using diffusion spectrum imaging MRI'', C Santos, R Lavrador, G Caetano, N Lori, RDM Travasso, Bioengineering (ENBENG), 2012 IEEE 2nd Portuguese Meeting, 1-4 (2012).

\item[76] ``Novel approach to vascular network modeling in 3D'', Maria Margarida Dias Soares Quinas Guerra, Rui DM Travasso, Bioengineering (ENBENG), 2012 IEEE 2nd Portuguese Meeting, 1-6 (2012).

\section*{Communications}

\subsection*{Invited}

\item[77] ``How abundant are superoxide and hydrogen peroxide in the vasculature 
lumen, how far can they reach?'', T. Sousa, M. Gouveia, RDM Travasso, A. Salvador, 3rd Meeting of Young Biophysicists, Porto, Portugal, 1st – 2nd Jun (2023).

\item[78] ``How abundant are superoxide and hydrogen peroxide in the vasculature 
lumen, how far can they reach?'', T. Sousa, M. Gouveia, RDM Travasso, A. Salvador, EBSA 2023, Stockholm, Sweden, 31st July – 4th Aug (2023).

\item[79] ``Movimento, Difusão, Tensão e Pressão - A Física na Biologia'', Travasso, R., IX Jornadas de Engenharia Física, Lisboa, Portugal, 22nd - 24th Feb (2023).

\item[80] ``Localised H2O2 gradients in the vasculature lumen and in the cellular 
cytoplasm'', R. Travasso, A. Salvador, T. Santos, M. Gouveia, A. Itacarambi, F. Aidos, P. Abranches, A. Bayani, SFRR-E Webinar Series “Emerging leaders in redox biology”, 4th Jul (2023).

\item[81] ``Adhesion modulates cell migration, erythrocyte morphology and endothelial cell Dynamics'', R. Travasso, et al., Immuno-engineering workshop, Turku, Finland, 14th-15th Mar (2023).

\item[82] ``Adhesion modulates cell migration, erythrocyte morphology and endothelial cell Dynamics'', R. Travasso, et al., Programa de Verão 2023, Laboratório Nacional de Computação Científica, 
16th Jan – 17th Feb, Rio de Janeiro (remote talk), Brazil (2023).

\item[83] ``Adhesion modulates cell migration, erythrocyte morphology and endothelial cell Dynamics'', R. Travasso, et al., LI Winter Meeting On Statistical Physics, Guanajuato, Mexico, 11th-14th Jan (2023).

\item[84] ``A Simulação Computacional em Biologia'', Travasso, R., Universidade do Porto, Porto, Portugal, 30th Aug (2022).

\item[85] ``A Simulação Computacional em Biologia'', Travasso, R., meet.Lab Coimbra, Coimbra, Portugal, 22th - 24th April (2022).

\item[86] ``Debate – Futuro da Investigação em Matéria Condensada'', R. Travasso, M. Telo da Gama, N. Araújo, J. Pires, Universidade do Porto, Porto, Portugal, 1st Oct (2022).

\item[87] ``Adhesion modulates cell migration, erythrocyte morphology and endothelial cell Dynamics'', R. Travasso, et al., Universidade de Lisboa, Lisboa, Portugal, 10th Nov (2022).

\item[88] ``Computational insights into the regulatory role of adhesion in metastatic invasion'', Maurício Moreira-Soares, José Rafael Bordin, Susana P Cunha, Rui DM Travasso, 55th Annual Scientific Meeting of ESCI, 9th - 11th Jun (2021).

\item[89] ``Adhesion modulates cell morphology and migration within dense fibrous networks'', Rui DM Travasso, Maurício M Soares, José Rafael Bordin, Susana P Cunha, 16th U.\,S. National Congress on Computational Mechanics, 25th - 29th July (2021).

\item[90] ``Proliferation and Movement – Modeling Angiogenesis'', Rui DM Travasso, Universidad de Carlos 3, Madrid, Spain, 17th Jan (2018).

\item[91] ``Mechanics and Anastomoses in Sprouting Angiogenesis'', Rui DM Travasso, Fields Institute Workshop “Modeling biological phenomena from nano to macro scale”, Toronto, Canada, 30th Apr - 4th May (2018).

\item[92] ``Proliferation and Movement – Modeling Angiogenesis'', Rui DM Travasso, Universidade de Aveiro, Aveiro, Portugal, 10th Oct (2018).

\item[93] ``Proliferation and Movement – Modeling Angiogenesis'', Rui DM Travasso, UC Biotech, Cantanhede, Portugal, 10th Jan (2018).

\item[94] ``Mechanics and Anastomoses in Angiogenesis'', Rui DM Travasso, Maurício M Soares, Marcos Gouveia, Minisymposium in Multiscale in-silico modelling of cancer biophysics and therapy, 6th European Conference on Computational Mechanics (ECCM 6) and 7th European Conference on Computational Fluid Dynamics (ECFD 7), Glasgow, UK, 11th – 15th June (2018).

\item[95] ``Mathematical Modeling of Cell Movement and Angiogenesis'', Rui DM Travasso, Maurício M Soares, Marcos Gouveia, Mechanobiology of cells in tissues in health and disease conference, Ljubljana, Slovenia, 8th – 9th Nov (2018).

\item[96] ``Mechanics and Anastomoses in Angiogenesis'', Rui DM Travasso, Maurício M Soares, Marcos Gouveia, New Trends in Mathematical Biology, Bellaterra, Spain, 4th – 8th June (2018).

\item[97] ``Mathematical Modeling of Cell Movement and Angiogenesis'', Rui DM Travasso, Maurício M Soares, Marcos Gouveia, Universidade do Porto, Porto, Portugal, 14th Nov (2018).

\item[98] ``Mathematical Modeling of Cell Movement and Angiogenesis'', Rui DM Travasso, Maurício M Soares, Marcos Gouveia, University of Dundee, Dundee, UK, 22nd Nov (2018).

\item[99] ``Mechanics and Anastomoses in Sprouting Angiogenesis'', Rui DM Travasso, Mini-symposium “Modelos Matemáticos Aplicados a la Biología del Cáncer” at CEDYA+CMA, Cartagena, Spain, 26th-30th Jun (2017).

\item[100] ``Angiogenic Factors Produced by Hypoxic Cells drive Anastomoses in Sprouting Angiogenesis'', Rui DM Travasso, Mauricio Soares, Rita Coimbra Luís Rebelo , João Carvalho, University of Castilla la Mancha, Ciudad Real, Spain, 29th Jun (2017).

\item[101] ``Mechanically-driven pattern formation in cell cultures'', João R. D. Ramos, Rui Travasso, João Carvalho, mini-symposium Angiogenesis and cell motility, in Mathematics of Complex Systems: from precision medicine to smart cities, Coimbra, Portugal, 5th-6th Dec (2016).

\item[102] ``Angiogenic factors produced by hypoxic cells drive anastomosis in sprouting angiogenesis'', M. M. Soares, L. Rebelo, R. Coimbra, J. Carvalho, R. D. M. Travasso, , mini-symposium Angiogenesis and cell motility, in Mathematics of Complex Systems: from precision medicine to smart cities, Coimbra, Portugal, 5th-6th Dec (2016).

\item[103] ``Examples of Modeling Vessel Growth'', Rui DM Travasso, Panel: Fighting Against Cancer: New Emerging Therapies, Bioengineering Week, Lisbon, Portugal, 29th Feb – 4th Mar (2016).

\item[104] ``Forces and Proliferation in Sprouting Angiogenesis'', Rui DM Travasso, Centrum Wiskunde \& Informatica (CWI), Amsterdam, Netherlands, 29st Jan (2016).

\item[105] ``Mechanics of Sprouting Angiogenesis in Tumors'', Rui DM Travasso, 5th International Iberian Biophysical Congress, Porto, Portugal, 15th-17th Jun (2016).

\item[106] ``Mechanics of Sprouting Angiogenesis in Tumors'', Rui DM Travasso, Mini-symposium “Tumor growth modeling and the mechanical aspects of cancer” at the Eccomas Congress 2016, Crete, Greece, 5th-10th Jun (2016).

\item[107] ``Using Mathematics and Physics to Understand Vessel Growth'', Rui DM Travasso, Session “Matemática e Ciências da Vida” at Ciência 2016, Lisbon, Portugal, 4th-6th Jul (2016).

\item[108] ``Tensão e proliferação celular no crescimento de vasos sanguíneos'', Rui DM Travasso, Federal University of Pelotas, Pelotas, Brazil, 1st Apr (2015).

\item[109] ``Using Mathematical Modeling to Understand Sprout Elongation in Sprouting Angiogenesis'', Rui DM Travasso, XIII CNC Annual Meeting, Coimbra, Portugal, 17th-18th Dec (2015).

\item[110] ``Tensão e proliferação celular no crescimento de vasos sanguíneos'', Rui DM Travasso, Federal University of Rio Grande do Sul, Porto Alegre, Brazil, 2nd Apr (2015).

\item[111] ``The force at the tip: modeling tension and proliferation in sprouting angiogenesis'', Rui DM Travasso, University of Lisbon, Lisbon, Portugal, 21st Oct (2015).

\item[112] ``The force at the tip: modeling tension and proliferation in sprouting angiogenesis'', Rui DM Travasso, II International Symposium on Basic and Clinical Investigation on Globlastoma, Toledo, Spain, 9th -12th Sep (2015).

\item[113] ``Kinetics of the folding process: Important lessons from coarse-grained models'', Rui DM Travasso, 1st Meeting of Young Researchers in Computational Structural Biology (EJIBCE), Porto, Portugal, 20th Dec (2013).

\item[114] ``Mathematical Modeling of Angiogenesis - Flow, Elasticity and Experiments'', Rui DM Travasso, University of Coimbra, Coimbra, Portugal, 20th Nov (2013).

\item[115] ``Mathematical Modeling of Pathological Angiogenesis'', Rui DM Travasso, University of Lisbon, Lisbon, Portugal, 22nd Jan (2013).

\item[116] ``Growing capillaries with the phase-field model'', Rui D. M. Travasso, Susete Neiva, Antonio Correia, Eugenia Corvera, Mario Castro, Juan Carlos Rodriguez-Manzaneque,  Aurora Hernandez- Machado, Mini symposium "Mathematical modeling and simulations of angiogenesis II" in SIAM Life Sicences, San Diego, USA, 7th-10th Aug (2012).

\item[117] ``Why do protein folding rates correlate with metrics of native topology'', Patrícia F.\,N. Faísca, Rui DM Travasso, Andrea Parisi, Antonio Rey, University of Coimbra, Coimbra, Portugal, 4th Oct (2011).

\item[118] ``Why do protein folding rates correlate with metrics of native topology'', Patrícia F.\,N. Faísca, Rui DM Travasso, Andrea Parisi, Antonio Rey, University of Porto, Porto, Portugal, 30th Sep (2011).

\item[119] ``Delivering nutrients to a tissue: blood flow and growing capillaries'', Rui DM Travasso, Aurora Hernández-Machado, Mario Castro, Eugenia Corvera Poiré, Joaquin Flores, Orlando Oliveira, Joana Oliveira, Tobias Schwartz, University of Coimbra, Coimbra, Portugal, 16th Feb (2011).

\item[120] ``Phase-Field Modeling in Tumor Growth and Angiogenesis'', Rui DM Travasso, Aurora Hernández-Machado, Mario Castro, Joana Oliveira, Eugenia Corvera Poiré, University of Castilla la Mancha, Ciudad Real, Spain, 30th Nov (2010).

\item[121] ``Towards a phase-field description of tumor angiogenesis'', Rui D. M. Travasso, Aurora Hernandez-Machado, Mario Castro, and Eugenia Corvera, Universidade do Porto, Porto, Portugal, 19th Nov (2008).

\item[122] ``Growing Blood Vessels in a Computer'', Rui D. M. Travasso, Aurora Hernandez-Machado, Mario Castro, and Eugenia Corvera, The Physics of Biological Systems: From Genes to Societies, Lisboa 2nd-3rd Oct (2008).

\item[123] ``Phase-field description of tumor angiogenesis'', Rui D. M. Travasso, Aurora Hernandez-Machado, Mario Castro, and Eugenia Corvera, Phase Field Simulations: Material Science meets Biology
and Medicine, 12th-14th Nov (2008).

\item[124] ``Nucleation phenomena in protein folding: role of chain length and native geometry'', Rui D. M. Travasso, Patricia Faisca, and Margarida M Telo da Gama, Instituto Superior de Engenharia de Lisboa, Lisbon, Portugal, 27th Feb (2008).

\subsection*{Oral}

\item[125] ``Fibrinogen-Mediated Erythrocyte-Erythrocyte Adhesion: Clinical Relevance, Experimental Assessment and Mathematical Modeling'', N. Santos, C. Lopes, J. Curty, F. Carvalho, A. Hernández-Machado, K. Kinoshita, R. Travasso, 11th International Conference on Biological Physics, South Korea, 14th – 18th Aug (2023).

\item[126] ``Adhesion modulates cell migration and endothelial cell dynamics'', R. Travasso, M. Gouveia, M. Palmeira, M. Soares, S. Cunha, J. Bordin, International Conference on Flow Dynamics 2023, Sendai, Japan (remote 
participation), 6th – 8th Nov (2023).

\item[127] ``Heart Rate in Mammals (contributed talk)'', R. Travasso, C. Penick, R. Dunn, E. Poiré, International Conference on Flow Dynamics 2023, Sendai, Japan (remote 
participation), 6th – 8th Nov (2023).

\item[128] ``Influence of the Underlining Duct Structure in Prostate Adenocarcinoma 
Progression'', F. Paiva, J. Carvalho, G. Lorenzo, R. Travasso, Encontro Novos Talentos em Física, Coimbra, Portugal, 23rd–24th Jul (2022).

\item[129] ``Influence of the Underlining Duct Structure in Prostate Adenocarcinoma 
Progression'', F. Paiva, J. Carvalho, G. Lorenzo, R. Travasso, Research School and Workshop on Mathematical Modeling of Self Organization in Medicine, Biology and Ecology, Palermo, Italy, 30th May – 3rd Jun (2022).

\item[130] ``Intratumoral VEGF Nanotrapper Reduces Gliobastoma Vascularization and 
Tumor Cell Mass'', Travasso, R., USACM Thematic Conference on the Role of Mathematical and Computational Modeling in Cancer Research, 10th - 11th January (2022).

\item[131] ``Adhesion modulates cell migration and endothelial cell dynamics'', R. Travasso, M. Gouveia, M. Palmeira, M. Soares, S. Cunha, J. Bordin, • Topology, Physics, and Chemistry of Soft Matter, Trento, Italy, 5th – 9th Sep (2022).

\item[132] ``Effect of Anti-VEGF Presentation in Controlling Vascular Development'', R. Travasso, M. Gouveia, I. Pinto, M. Soares, C. Henriques, 56th Annual Scientific Meeting of ESCI, Bari, Italy, 8th - 10th Jun (2022).

\item[133] ``Role of prostate gland network structure in early stage prostate cancer growth'', António Sérgio Morais, Guillermo Lorenzo, Rui DM Travasso, João Carvalho, Virtual SMB 2021 Annual Meeting, 13th - 17th June (2021).

\item[134] ``Role of prostate gland network structure in early stage prostate cancer growth'', António Sérgio Morais, Guillermo Lorenzo, Rui DM Travasso, João Carvalho, 55th Annual Scientific Meeting of ESCI, 9th - 11th Jun (2021).

\item[135] ``Modeling angiogenesis in type 2 diabetes mellitus: integrating experimental and theoretical approaches'', T. Cruz, M. Gouveia, M. Oliveira, R. Travasso, EMBO workshop - Vascular malformations: From fundamental biology to 
therapeutic opportunities, Badalona, Spain, 6th - 8th Oct (2021).

\item[136] ``Three dimensional computer model of urothelium, bladder cancer development and collective tumor invasion'', João Carvalho, Valéria Lopes, Rui Travasso, 55th Annual Scientific Meeting of ESCI, 9th - 11th Jun (2021).

\item[137] ``Fibrinogen-Mediated Erythrocyte Adhesion'', Juliana Curty, Catarina Soura Lopes, A. Hernández-Machado, Filomena Carvalho, Nuno Correia Santos, Rui DM Travasso, 55th Annual Scientific Meeting of ESCI, 9th - 11th Jun (2021).

\item[138] ``Fibrinogen-Mediated Erythrocyte Adhesion'', Juliana Curty, Catarina Soura Lopes, A. Hernández-Machado, Filomena Carvalho, Nuno Correia Santos, Rui DM Travasso, Virtual SMB 2021 Annual Meeting, 13th - 17th June (2021).

\item[139] ``Tip cell migration in sprouting angiogenesis: The role of extracellular matrix mechanics'', Marcos Gouveia, Rui DM Travasso, Virtual SMB 2021 Annual Meeting, 13th - 17th June (2021).

\item[140] ``Mathematical Perspective on Keratin Aggregate Formation in Keratinocytes with the Severe K14 R125P Mutation'', Marcos Gouveia, Tjasa Sorcan, Spela Zemljic-Jokhadar, Rui DM Travasso, Mirjana Liovic, 55th Annual Scientific Meeting of ESCI, 9th - 11th Jun (2021).

\item[141] ``Adhesion modulates cell morphology and migration within dense fibrous networks'', Rui DM Travasso, Maurício M Soares, José Rafael Bordin, Susana P Cunha, Virtual SMB 2021 Annual Meeting, 13th - 17th June (2021).

\item[142] ``3D Multiscale Modeling of Chemotherapeutic Drug Delivery to Malignant Tumors'', Sahar Jafari Nivlouei, M Soltani, João Carvalho, Rui DM Travasso, Mohammad Reza Salimpour, Ebrahim Shirani, Virtual SMB 2021 Annual Meeting, 13th - 17th June (2021).

\item[143] ``3D Multiscale Modeling of Chemotherapeutic Drug Delivery to Malignant Tumors'', Sahar Jafari Nivlouei, M Soltani, João Carvalho, Rui DM Travasso, Mohammad Reza Salimpour, Ebrahim Shirani, 55th Annual Scientific Meeting of ESCI, 9th - 11th Jun (2021).

\item[144] ``How Far can H2O2 Travel in Blood Circulation?'', Tânia Sousa, Rui DM Travasso, Armindo Salvador, Virtual SMB 2021 Annual Meeting, 13th - 17th June (2021).

\item[145] ``How Far can H2O2 Travel in Blood Circulation?'', Tânia Sousa, Rui DM Travasso, Armindo Salvador, 55th Annual Scientific Meeting of ESCI, 9th - 11th Jun (2021).

\item[146] ``How Far can H2O2 Travel in Blood Circulation?'', Tânia Sousa, Rui DM Travasso, Armindo Salvador, 20th Biennial Meeting of SFRR International, 15th - 18th Mar (2021).

\item[147] ``Mathematical Modeling of Cell Movement and Angiogenesis'', Rui DM Travasso, Maurício M Soares, Marcos Gouveia, University of Coimbra, Coimbra, Portugal. 28 February 2020 (2020).

\item[148] ``Data Extraction from Mitochondrial Motility Tracking using Computational Algorithms (contributed talk)'', Rute Pino, Rui Simões, Maurício Moreira‐Soares, Teresa Cunha‐Oliveira, J. Kovarova, J. Neuzil, Rui DM Travasso, Paulo J Oliveira, Francisco Pereira, ESCI Virtual Meeting 2020 – COVID Edition, 20-30 September 2020 (2020).

\item[149] ``Keratin dynamics: solving PDEs inside moving domains using phase-field methods'', Marcos Gouveia, Miguel Murça, Mirjana Liovic, Rui DM Travasso, Measuring and Modelling Cell Migration, Vienna, Austria, 22th-23th Feb (2018).

\item[150] ``Simulating vessel growth with extracellular matrix remodeling'', Marcos Gouveia, Rui DM Travasso, Física 2018, Covilhã, Portugal, 30th Aug - 1st Sep (2018).

\item[151] ``Modelling cell shape and migration: a phase-field approach'', Mauricio Moreira-Soares, José Rafael Bordin, Abdul I. Barakat, Rui D. M. Travasso, , 11th European Conference on Mathematical and Theoretical Biology (ECMTB 2018) (2018).

\item[152] ``Understanding cell shape and migration – a computational study'', Maurício Moreira Soares, José R. Bordin, Abdul Barakat, Rui DM Travasso, Física 2018, Covilhã, Portugal, 30th Aug - 1st Sep (2018).

\item[153] ``The stiffness of keratinocytes at small deformations depends on keratin dynamics'', Špela Zemljič-Jokhadar, Jure Derganc, Marcos Gouveia, Biljana Stojković, Marko Vidak, Rui Travasso, Mirjana Liović, EuroCellNet Scientific Meeting, Brussels, Belgium, 30th-31st May (2018).

\item[154] ``Simulating vessel growth with extracellular matrix remodeling'', Marcos Gouveia, Rui DM Travasso, ECCOMAS MultiBioMe, Vienna, Austria, 11th-13th Sep (2017).

\item[155] ``Modeling Tension and Adhesion in Cell Movement and Angiogenesis'', Rui DM Travasso, Session “Oncology” at Ciência 2017, Lisbon, Portugal, 3rd-5th Jul (2017).

\item[156] ``Modeling Tension and Adhesion in Cell Movement and Angiogenesis'', Rui DM Travasso, EuroCellNet Workshop, Prague, Czech Republic, 23rd-24th Mar (2017).

\item[157] ``Modelação de crescimento axonal'', Beatriz Costa Gomes, Ramiro Almeida, Rui DM Travasso, Presentation of Projects in Biomedical Engineering, Coimbra, Portugal, 10th Feb (2016).

\item[158] ``Tumor angiogenesis: a mathematical model in three dimensions'', M. M. Soares, L. Rebelo, R. A. Coimbra, J. Carvalho, R. D. M. Travasso, , Physical Biology of Tissue Morphogenesis - Mechanics, Metabolism and Signaling, Dresden, Germany, 17th-21st Oct (2016).

\item[159] ``Vascular Growth in Tumor Angiogenesis: a Mathematical Model in Three Dimensions'', Rita Coimbra, Maurício Moreira-Soares , João Carvalho, Rui DM Travasso, Física 2016, Braga, Portugal, 8th-10th Sep (2016).

\item[160] ``Mechanics of Sprouting Angiogenesis in Tumors'', Rui DM Travasso, Modelling and Experiments in Drug Delivery Systems, Coimbra, Portugal, 20th-22nd Jun (2016).

\item[161] ``Reconstrução Automática da Rede Capilar da Retina de um Paciente'', Rute Marto, Luís Cruz, Rui DM Travasso, João Carvalho, Presentation of Projects in Biomedical Engineering, Coimbra, Portugal, 30th May (2016).

\item[162] ``Tumour angiogenesis and vascular patterning: a mathematical model'', M. M. Soares, R. D. M. Travasso, A. Diehl, XVI UFPel Meeting of Postgraduate, Pelotas, Brasil. (2014).

\item[163] ``Regulation of Blood Vessel Growth'', Patrícia Oliveira, Rui DM Travasso, João Carvalho, Orlando Oliveira, Presentation of Projects in Biomedical Engineering, Coimbra, Portugal, 30th May (2014).

\item[164] ``Mechanical Forces in Vascular Sprouting'', Rui DM Travasso, 9th European Conference on Mathematical and Theoretical Biology, Gotemburg, Sweden, 15th-19th Jun (2014).

\item[165] ``Mathematical Modeling of Angiogenesis - Flow, Elasticity and Experiments'', Rui DM Travasso, Teresa M Ribeiro-Rodrigues, António L Correia, Eugenia Corvera Poiré, Mario Castro, Juan Carlos Rodríguez-Manzaneque, A. Hernández-Machado, Mathways into Cancer II, Carmona, Sevilla (Spain), 27th-30th May (2013).

\item[166] ``Modelacao 3D de crescmento de redes vasculares em condicoes patologicas'', Margarida D.\,S. Quinas Guerra, Rui D.\,M. Travasso, Apresentacao Intercalar dos Projectos de Engenharia Biomedica, Coimbra, Portugal, 16th-18th February (2011).

\item[167] ``Delivering nutrients to a tissue: blood flow and growing capillaries'', Rui D.\,M. Travasso, Aurora Hernandez-Machado, Mario Castro, Eugenia Corvera, Juan Carlos Rodriguez-Manzaneque, Joaquin Flores, Orlando Oliveira, Joana Oliveira, Tobias Schwartz, SINAL 2011, Coimbra, Portugal, 28th-30th April (2011).

\item[168] ``Phase-field modeling in tumor growth and angiogenesis'', Rui D. M. Travasso, Aurora Hernandez-Machado, Mario Castro, Eugenia Corvera, and Juan Carlos Rodriguez-Manzaneque, First Porto Meeting on Theory and Experiment in Nonlinear Physics, Porto, Portugal, 7th-9th July (2010).

\item[169] ``Towards a model for angiogenesis'', Rui D. M. Travasso, Aurora Hernandez-Machado, Mario Castro, and Eugenia Corvera, Summer school: New trends in physics and mechanics of biological systems, Les Houches, France, July (2009).

\item[170] ``Simulation of the spinodal phase separation dynamics of the Bi-Zn system'', Joana C.\,R.\,E. Oliveira, Maria H. Braga, Rui D.\,M. Travasso, Non-Crystalline Solids, Porto, 27th-30th Apr (2008).

\subsection*{Poster}

\item[171] ``Modeling the Transport of Hydrogen Peroxide in Human Tissues'', A. Itacarambi, R. Travasso, A. Salvador, 3rd Meeting of Young Biophysicists, Porto, Portugal, 1st – 2nd Jun (2023).

\item[172] ``Mathematical Modeling of Endothelial Cell Dynamics in Vascular Sprouts'', M. Palmeira, M. Gouveia, R. Travasso, Building Bridges in Biology Symposium, 1st – 3rd Mar (2023).

\item[173] ``Spatially localized redox relays allow sensitive site-specific hydrogen peroxide signaling'', A. Salvador, M. Griffith, A. Araújo, R. Travasso, SfRBM 23, Punta del Este, Uruguay, 15th – 18th Nov (2023).

\item[174] ``How far can H2O2 signal over the circulation, how abundant is it?'', A. Salvador, T. Sousa, M. Gouveia, R. Travasso, EMBO Workshop on Thiol Oxidation in Biology: Biochemical Mechanisms to 
Physiological Outcomes, 8th – 13th Oct (2022).

\item[175] ``Effect of Anti-VEGF Presentation in Controlling Vascular Development'', R. Travasso, M. Gouveia, I. Pinto, M. Soares, C. Henriques, Iberian Biophysics Congress, Bilbao, Spain, 20th – 21st June (2022).

\item[176] ``Mathematical Modeling of Vascular Network Growth in Endometriosis'', R. Travasso, M. Gouveia, I. Pinto, M. Soares, C. Henriques, 6th European Endometriosis Congress, Bordeaux, France, 15th – 17th June (2022).

\item[177] ``Biomechanical properties of obese and diabetic extracellular matrices impact on blood vessel formation'', T. Cruz, M. Gouveia, M. Oliveira, R. Travasso, EACR Goodbye Flat Biology: Next Generation Cancer Models, 5th - 6th Oct (2021).

\item[178] ``Keratin dynamics: solving PDEs inside moving domains using phase-field methods'', Marcos Gouveia, Miguel Murça, Mirjana Liovic, Rui DM Travasso, Measuring and Modelling Cell Migration, Vienna, Austria, 22th-23th Feb (2018).

\item[179] ``Modelling the growth of glioblastomas'', Marina Oliveira, João Carvalho, Rui DM Travasso, Presentation of Projects in Biomedical Engineering, Coimbra, Portugal, 1st Jun (2018).

\item[180] ``Modelling the growth of glioblastomas'', Marina Oliveira, João Carvalho, Rui DM Travasso, Presentation of Projects in Biomedical Engineering, Coimbra, Portugal, 9th Feb (2018).

\item[181] ``Modelling cell shape and migration with a phase-field model'', Mauricio Moreira-Soares, José Rafael Bordin, Abdul I. Barakat, Rui D. M. Travasso, , Measuring and modelling cell migration, Wien, Österreich (2018).

\item[182] ``Modeling cell shape and migration with a phase-field model'', Maurício Moreira Soares, José R. Bordin, Abdul Barakat, Rui DM Travasso, Física 2018, Covilhã, Portugal, 30th Aug - 1st Sep (2018).

\item[183] ``Localized redox relays as a privileged mode of cytoplasmic hydrogen peroxide signaling'', Rui DM Travasso, Fernando Sampaio dos Aidos, Pedro Abranches, Anahita Bayani, Armindo Salvador, OCC World Congress and Annual SFRR-E Conference 2017 - Metabolic Stress and Redox Regulation, Berlin, Germany, 21st-23rd Jun (2017).

\item[184] ``Modelação de crescimento axonal'', Beatriz Costa Gomes, Ramiro Almeida, Rui DM Travasso, Presentation of Projects in Biomedical Engineering, Coimbra, Portugal, 30th May (2016).

\item[185] ``Tumor Angiogenesis: a Mathematical Model in Three Dimensions'', Maurício Moreira-Soares , Rita Coimbra, João Carvalho, Rui DM Travasso, Ciência 2016, Lisbon, Portugal, 4th-6th Jul (2016).

\item[186] ``Vascular Growth in Tumor Angiogenesis: a Mathematical Model in Three Dimensions'', Rita Coimbra, Maurício Moreira-Soares, João Carvalho, Rui DM Travasso, Porto Meetings in Mathematics and Biology, Porto, Portugal, 15th-17th Jun (2016).

\item[187] ``Reconstrução Automática da Rede Capilar da Retina de um Paciente'', Rute Marto, Luís Cruz, Rui DM Travasso, João Carvalho, Presentation of Projects in Biomedical Engineering, Coimbra, Portugal, 10th Feb (2016).

\item[188] ``Regulation of Blood Vessel Growth'', Patrícia Oliveira, Rui DM Travasso, João Carvalho, Orlando Oliveira, Presentation of Projects in Biomedical Engineering, Coimbra, Portugal, 12th-14th Feb (2014).

\item[189] ``Mechanical Forces in Vascular Sprouting'', Rui DM Travasso, António Correia, Patrícia Oliveira, 5th International Meeting in Angiogenesis, Amsterdam, Netherlands, 12th-14th Mar (2014).

\item[190] ``Validity of the contact order – rate correlation in the folding of small single domain proteins – A Monte Carlo simulation'', Rui DM Travasso, Heinrich Krobath, Patrícia Faísca, CCP2014, Boston, USA, 11th-14th Aug (2014).

\item[191] ``Modeling angiogenesis – a theoretical and experimental study'', Rui DM Travasso, Tiago Rodrigues, Teresa Rodrigues, Carlos Peris Torres, Paulo Matafome, Raquel Seiça, Henrique Girão, IV Meeting of IBILI, Coimbra, Portugal, 11th-12th Dec (2014).

\item[192] ``A mathematical model for pathological angiogenesis'', M. M. Soares, R. D. M. Travasso, A. Diehl, XXXVI National Meeting on Condensed Matter Physics, São Paulo, Brasil. (2013).

\item[193] ``Physical approach for vascular endothelial growth modelling'', M. M. Soares, R. D. M. Travasso, A. Diehl, I South Meeting of Physics, Curitiba, Brasil. (2013).

\item[194] ``Hypoxia in vascular networks: a complex system approach to unraveling the Diabetes paradox.'', Yerali Gandica, Tobias Schwartz, Orlando Oliveira and Rui Travasso, European Conference in Complex Networks (ECCS ́2013), Barcelona. 16-20 September (2013).

\item[195] ``Influence of tissue mechanics on blood vessel growth'', António Correia, Rui DM Travasso, Apresentação Intercalar dos Projetos de Engenharia Biomédica, Coimbra, Portugal, 6th-8th June (2012).

\item[196] ``Influence of tissue mechanics on blood vessel growth'', António Correia, Rui DM Travasso, Apresentação Intercalar dos Projetos de Engenharia Biomédica, Coimbra, Portugal, 23rd-25th Feb (2012).

\item[197] ``Simple and complete mathematical modeling framework of angiogenesis'', Rui D. M. Travasso, Susete Neiva, Antonio Correia, Eugenia Corvera, Mario Castro, Juan Carlos Rodriguez-Manzaneque,  Aurora Hernandez- Machado, Angiogenesis - Molecular Mechanisms and Functional Interactions, 7th International Kloster Seeon Meeting in Angiogenesis, Kloster Seeon, Germany, 14th-18th Sep (2012).

\item[198] ``Why do protein folding rates correlate with metrics of native topology?'', Rui DM Travasso, Patrcia Fasca, Andrea Parisi, Antonio Rey, Gordon Reseach Conference - Protein Folding Dynamics, Ventura, U.\,S.\,A. 8th-
13th January (2012).

\item[199] ``Mathematical modeling of pathological angiogenesis'', Rui DM Travasso, Teresa M Ribeiro-Rodrigues, António L Correia, Eugenia Corvera Poiré, Mario Castro, Juan Carlos Rodríguez-Manzaneque, A. Hernández-Machado, 2nd PF2MUC Symposium - Changing Paradigms of Science, Coimbra, Portugal, 26th Oct (2012).

\item[200] ``Mathematical modeling of pathological angiogenesis'', Rui DM Travasso, Teresa M Ribeiro-Rodrigues, António L Correia, Eugenia Corvera Poiré, Mario Castro, Juan Carlos Rodríguez-Manzaneque, A. Hernández-Machado, IBILI Meeting 2012, Coimbra, Portugal, 6th-7th Dec (2012).

\item[201] ``Morphology of vascular networks - a computational study'', Susete Neiva, Rui DM Travasso, Apresentação Intercalar dos Projetos de Engenharia Biomédica, Coimbra, Portugal, 23rd-25th Feb (2012).

\item[202] ``Morphology of vascular networks - a computational study'', Susete Neiva, Rui DM Travasso, Apresentação Intercalar dos Projetos de Engenharia Biomédica, Coimbra, Portugal, 6th-8th June (2012).

\item[203] ``Quantitative determination of VEGF produces and internalized in a human endothelial cell line'', Teresa Rodrigues, Paulo Pereira, Rui D.\,M. Travasso, SINAL 2012, Braga, Portugal, 13th-14th Apr (2012).

\item[204] ``Modelacao 3D de crescmento de redes vasculares em condicoes patologicas'', Margarida D.\,S. Quinas Guerra, Rui D.\,M. Travasso, Apresentacao Intercalar dos Projectos de Engenharia Biomedica, Coimbra, Portugal, 1st-3rd June (2011).

\item[205] ``Delivering nutrients to a tissue: blood flow and capillary growth'', Rui D.\,M. Travasso, Tobias Schwartz, Eugenia Corvera, Mario Castro, Juan Carlos Rodriguez-Manzaneque, Orlando Oliveira, Joana Oliveira, Aurora Hernandez- Machado, FisEs 2011, Barcelona, Spain, 2nd-4th June (2011).

\item[206] ``Delivering nutrients to a tissue: blood flow and capillary growth'', Rui D.\,M. Travasso, Tobias Schwartz, Eugenia Corvera, Mario Castro, Juan Carlos Rodriguez-Manzaneque, Orlando Oliveira, Joana Oliveira, Aurora Hernandez- Machado, 1st PF2MUC Symposium, Coimbra, Portugal, 17th October (2011).

\item[207] ``Phase Field Simulations on miscibility gaps'', Joana O. Espain, Rui D. M. Travasso, Luc L. Daemen, and Maria Helena Braga, Frontiers in interface physics: microfluidics, biomembranes and nanostructures, Benasque, Spain, 10th-14th November (2010).

\item[208] ``Angiogenesis and vascular patterning'', Rui D. M. Travasso, Eugenia Corvera, Mario Castro, Juan Carlos Rodriguez-Manzaneque, and Aurora Hernandez-Machado, Modelling Angiogenesis - Joining cells, maths and computers, Leiden, Netherlands, 4th-8th October (2010).

\item[209] ``Angiogenesis and vascular patterning'', Rui D. M. Travasso, Eugenia Corvera, Mario Castro, Juan Carlos Rodriguez-Manzaneque, and Aurora Hernandez-Machado, Frontiers in interface physics: microfluidics, biomembranes and nanostructures, Benasque, Spain, 10th-14th November (2010).

\item[210] ``Angiogenesis and vascular patterning'', Rui D. M. Travasso, Eugenia Corvera, Mario Castro, Juan Carlos Rodriguez-Manzaneque, and Aurora Hernandez-Machado, Physics meets Biology, Oxford, UK, 1st-3rd September (2010).

\item[211] ``Phase Field Simulations on miscibility gaps'', Rui D. M. Travasso, Joana O. Espain, Luc L. Daemen, and Maria Helena Braga, TOFA - Discussion Meeting on Thermodynamics of Alloys, Porto, Portugal, 12th-16th September (2010).

\item[212] ``Phase-field description of tumor angiogenesis'', Rui D. M. Travasso, Aurora Hernandez-Machado, Mario Castro, and Eugenia Corvera, Biophysical Mechanisms of Development, Oeiras, Portugal, 25th - 27th May (2009).

\item[213] ``Capillary growth induced by tumors'', Susana Silva, Rui D. M. Travasso, and Fernando Nogueira,, Apresentacao Intercalar dos Projectos de Engenharia Biomedica, Coimbra, Portugal, 18th-20th Feb (2009).

\item[214] ``Capillary growth induced by tumors'', Susana Silva, Rui D. M. Travasso, and Fernando Nogueira,, Apresentacao Intercalar dos Projectos de Engenharia Biomedica, Coimbra, Portugal 3rd - 5th June (2009).

\item[215] ``Finite Element Simulations of Immiscible Liquids on Lead Free Solders'', Maria H. Braga, J. C. R. E. Oliveira, R. D. M. Travasso, L. F. Malheiros, and J. Ferreira, Advanced Solder Materials for High Temperature Application (HISOLD),
Genoa, Italy 21th-22th Feb (2008).

\item[216] ``Identifying critical residues in protein folding: Insights from phi-value and Pfold analysis'', Patricia F.\,N. Faisca, and Rui D.\,M. Travasso, Protein Folding Dynamics - Gordon Research Conferences, Ventura, USA, 6th-11th Jan (2008).

\section*{Thesis}

\subsection*{PhD thesis}

\item[217] ``Coarsening in sheared systems and metastability in ising systems with four-spin interactions'', Rui D. M. Travasso, Universty of Manchester, UK (2003).

\end{itemize}
\end{document}